5LXR Rna Binding Protein date Sep 22, 2016
title Structure Of The Minimal Rbm7 - Zcchc8 Complex
authors S.Falk, K.Finogenova, C.Benda, E.Conti
compound source
Molecule: Rna-Binding Protein 7
Chain: A
Synonym: Rna-Binding Motif Protein 7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm7
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Zinc Finger Cchc Domain-Containing Protein 8
Chain: B
Synonym: Tramp-Like Complex Rna-Binding Factor Zcchc8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zcchc8
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 63 2 2
R_factor 0.202 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.519 79.519 87.609 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand BR, CL, SM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the RBM7-ZCCHC8 core of the NEXT complex reveals connections to splicing factors., Falk S, Finogenova K, Melko M, Benda C, Lykke-Andersen S, Jensen TH, Conti E, Nat Commun. 2016 Dec 1;7:13573. doi: 10.1038/ncomms13573. PMID:27905398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (5lxr.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5LXR
  • CSU: Contacts of Structural Units for 5LXR
  • Structure Factors (282 Kb)
  • Retrieve 5LXR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LXR from S2C, [Save to disk]
  • Re-refined 5lxr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LXR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LXR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lxr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lxr_B] [5lxr_A] [5lxr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LXR
  • Community annotation for 5LXR at PDBWiki (http://pdbwiki.org)

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