5LXU Dna Binding Protein date Sep 22, 2016
title Structure Of The Dna-Binding Domain Of Lux Arrhythmo
authors C.Zubieta, M.H.Nanao
compound source
Molecule: Transcription Factor Lux
Chain: A
Synonym: Protein Lux Arrhythmo,Protein Phytoclock 1
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Lux, Pcl1, At3g46640, F12a12.160
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Aptpgpcpgptpaptpcptptpapgpaptpapcpgpcp
Chain: U
Engineered: Yes
Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702

Molecule: Dna (5'- D(Aptpgpcpgptpaptpcptptpapgpaptpapcpgpcp
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
symmetry Space Group: P 1 2 1
R_factor 0.195 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.160 32.830 53.760 90.00 98.61 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (5lxu.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 5LXU
  • CSU: Contacts of Structural Units for 5LXU
  • Structure Factors (504 Kb)
  • Retrieve 5LXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LXU from S2C, [Save to disk]
    • View 5LXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LXU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lxu_A] [5lxu_B] [5lxu_U]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LXU
  • Community annotation for 5LXU at PDBWiki (http://pdbwiki.org)

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