5LXX Transcription date Sep 23, 2016
title High-Resolution Structure Of Human Collapsin Response Mediat
authors M.Myllykoski, K.Hensley, P.Kursula
compound source
Molecule: Dihydropyrimidinase-Related Protein 2
Chain: A, B
Synonym: Drp-2,Collapsin Response Mediator Protein 2,Crmp-2 33-Like Phosphoprotein 2,Ulip-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpysl2, Crmp2, Ulip2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.104 R_Free 0.133
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.760 97.040 92.380 90.00 122.54 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand BTB, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCollapsin response mediator protein 2: high-resolution crystal structure sheds light on small-molecule binding, post-translational modifications, and conformational flexibility., Myllykoski M, Baumann A, Hensley K, Kursula P, Amino Acids. 2017 Jan 2. doi: 10.1007/s00726-016-2376-z. PMID:28044206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (5lxx.pdb1.gz) 1064 Kb
  • LPC: Ligand-Protein Contacts for 5LXX
  • CSU: Contacts of Structural Units for 5LXX
  • Structure Factors (2311 Kb)
  • Retrieve 5LXX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LXX from S2C, [Save to disk]
  • Re-refined 5lxx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LXX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LXX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lxx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lxx_A] [5lxx_B] [5lxx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LXX
  • Community annotation for 5LXX at PDBWiki (http://pdbwiki.org)

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