5LYW Hydrolase date Sep 28, 2016
title Crystal Structure Of Human Methionine Aminopeptidase-2 In Co With An Inhibitor 6-((R)-2-O-Tolyloxymethyl-Pyrrolidin-1-Yl Purine
authors D.Musil, T.Heinrich, T.Knoechel, M.Lehmann
compound source
Molecule: Methionine Aminopeptidase 2
Chain: A
Fragment: 108-478
Synonym: Metap 2,Initiation Factor 2-Associated 67 Kda Glyc P67eif2,Peptidase M;
Ec: 3.4.11.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Metap2, Mnpep, P67eif2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.171 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.780 100.230 100.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand 7BH, MN enzyme Hydrolase E.C.3.4.11.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel reversible methionine aminopeptidase-2 (MetAP-2) inhibitors based on purine and related bicyclic templates., Heinrich T, Buchstaller HP, Cezanne B, Rohdich F, Bomke J, Friese-Hamim M, Krier M, Knochel T, Musil D, Leuthner B, Zenke F, Bioorg Med Chem Lett. 2017 Feb 1;27(3):551-556. doi: 10.1016/j.bmcl.2016.12.019. , Epub 2016 Dec 8. PMID:27998678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5lyw.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 5LYW
  • CSU: Contacts of Structural Units for 5LYW
  • Structure Factors (3860 Kb)
  • Retrieve 5LYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LYW from S2C, [Save to disk]
  • View 5LYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LYW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lyw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LYW
  • Community annotation for 5LYW at PDBWiki (http://pdbwiki.org)

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