5LZ5	Hydrolase	date	Sep 29, 2016
title	Fragment-Based Inhibitors Of Lipoprotein Associated Phosphol
authors	A.J.A.Woolford, P.J.Day
compound		source
Molecule: Platelet-Activating Factor Acetylhydrolase Chain: A Synonym: Paf Acetylhydrolase,1-Alkyl-2-Acetylglycerophospho Esterase,2-Acetyl-1-Alkylglycerophosphocholine Esterase,Gro Phospholipase A2,Gviia-Pla2,Ldl-Associated Phospholipase A2 Pla(2),Paf 2-Acylhydrolase; Ec: 3.1.1.47 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pla2g7, Pafah Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_vector: Pet30a
symmetry	Space Group: C 1 2 1	R_factor 0.184 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.091 91.494 48.648 90.00 111.92 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	7K4, CL	enzyme	Hydrolase E.C.3.1.1.47 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Fragment-Based Approach to the Development of an Orally Bioavailable Lactam Inhibitor of Lipoprotein-Associated Phospholipase A2 (Lp-PLA2)., Woolford AJ, Day PJ, Beneton V, Berdini V, Coyle JE, Dudit Y, Grondin P, Huet P, Lee LY, Manas ES, McMenamin RL, Murray CW, Page LW, Patel VK, Potvain F, Rich SJ, Sang Y, Somers DO, Trottet L, Wan Z, Zhang X, J Med Chem. 2016 Dec 8;59(23):10738-10749. Epub 2016 Nov 18. PMID:27933945

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (5lz5.pdb1.gz) 132 Kb LPC: Ligand-Protein Contacts for 5LZ5 CSU: Contacts of Structural Units for 5LZ5 Structure Factors (558 Kb) Retrieve 5LZ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LZ5 from S2C, [Save to disk] Re-refined 5lz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LZ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LZ5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lz5] [5lz5_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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