5M06 Signaling Protein date Oct 03, 2016
title Crystal Structure Of Mycobacterium Tuberculosis Pkni Kinase
authors T.Wagner, M.N.Lisa, M.Alexandre, N.Barilone, B.Raynal, P.M.Alzari M.Bellinzoni
compound source
Molecule: Serinethreonine-Protein Kinase Pkni
Chain: A, B
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Gene: Pkni, Rv2914c, Mtcy338.02c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 2 2 21
R_factor 0.212 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.004 69.541 257.417 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ADP, CA enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of PknI from Mycobacterium tuberculosis shows an inactive, pseudokinase-like conformation., Lisa MN, Wagner T, Alexandre M, Barilone N, Raynal B, Alzari PM, Bellinzoni M, FEBS J. 2017 Jan 5. doi: 10.1111/febs.14003. PMID:28054744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (5m06.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 5M06
  • CSU: Contacts of Structural Units for 5M06
  • Structure Factors (2728 Kb)
  • Retrieve 5M06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M06 from S2C, [Save to disk]
  • Re-refined 5m06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M06
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m06] [5m06_A] [5m06_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M06
  • Community annotation for 5M06 at PDBWiki (http://pdbwiki.org)

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