5M1M Viral Protein date Oct 09, 2016
title Crystal Structure Of Matrix Protein 1 From Influenza C Virus Cann Arbor11950)
authors J.Radzimanowski, W.Weissenhorn
compound source
Molecule: Matrix Protein 1
Chain: A
Engineered: Yes
 Organism_scientific: Influenza C Virus (Strain Cann Arbor
Organism_taxid: 11553
Strain: Cann Arbor11950
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.398 26.841 77.224 90.00 108.40 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Matrix protein M1 from influenza C virus induces tubular membrane invaginations in an in vitro cell membrane model., Saletti D, Radzimanowski J, Effantin G, Midtvedt D, Mangenot S, Weissenhorn W, Bassereau P, Bally M, Sci Rep. 2017 Jan 25;7:40801. doi: 10.1038/srep40801. PMID:28120862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5m1m.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 5M1M
  • CSU: Contacts of Structural Units for 5M1M
  • Structure Factors (443 Kb)
  • Retrieve 5M1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M1M from S2C, [Save to disk]
  • Re-refined 5m1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M1M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m1m_A] [5m1m]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M1M
  • Community annotation for 5M1M at PDBWiki (http://pdbwiki.org)

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