5M2X Viral Protein date Oct 13, 2016
title Crystal Structure Of The Full-Length Zika Virus Ns5 Protein Isolate Z1106033)
authors D.S.Ferrero, V.M.Ruiz-Arroyo, N.Soler, I.Uson, N.Verdaguer
compound source
Molecule: Ns5
Chain: A, B, C, D, E, F
Engineered: Yes
Organism_scientific: Zika Virus (Strain Mr 766)
Organism_common: Zikv
Organism_taxid: 64320
Strain: Mr 766
Variant: Mr 766
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Prset
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
191.060 192.060 407.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.99 Å
ligand PO4, SAH, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceSupramolecular arrangement of the full-length Zika virus NS5., Ferrero DS, Ruiz-Arroyo VM, Soler N, Uson I, Guarne A, Verdaguer N, PLoS Pathog. 2019 Apr 5;15(4):e1007656. doi: 10.1371/journal.ppat.1007656., eCollection 2019 Apr. PMID:30951555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (886 Kb) [Save to disk]
  • Biological Unit Coordinates (5m2x.pdb1.gz) 155 Kb
  • Biological Unit Coordinates (5m2x.pdb2.gz) 155 Kb
  • Biological Unit Coordinates (5m2x.pdb3.gz) 155 Kb
  • Biological Unit Coordinates (5m2x.pdb4.gz) 156 Kb
  • Biological Unit Coordinates (5m2x.pdb5.gz) 156 Kb
  • Biological Unit Coordinates (5m2x.pdb6.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 5M2X
  • CSU: Contacts of Structural Units for 5M2X
  • Structure Factors (1357 Kb)
  • Retrieve 5M2X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M2X from S2C, [Save to disk]
  • View 5M2X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5M2X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m2x_C] [5m2x_E] [5m2x_F] [5m2x_D] [5m2x_B] [5m2x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5M2X
  • Community annotation for 5M2X at PDBWiki (http://pdbwiki.org)

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