5M32 Hydrolase date Oct 14, 2016
title Human 26s Proteasome In Complex With Oprozomib
authors D.Haselbach, J.Schrader, F.Lambrecht, F.Henneberg, A.Chari, H.Sta
compound source
Molecule: Proteasome Subunit Alpha Type-2
Chain: A, O
Synonym: Macropain Subunit C3,Multicatalytic Endopeptidase Subunit C3,Proteasome Component C3;
Ec: 3.4.25.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-4
Chain: B, P
Synonym: Macropain Subunit C9,Multicatalytic Endopeptidase Subunit C9,Proteasome Component C9,Proteasome Subunit L;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-7
Chain: C
Synonym: Proteasome Subunit Rc6-1,Proteasome Subunit Xapc7
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-5
Chain: D, R
Synonym: Macropain Zeta Chain,Multicatalytic Endopeptidase Zeta Chain,Proteasome Zeta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-1
Chain: E
Synonym: 30 Kda Prosomal Protein,Pros-30,Macropain Subunit Multicatalytic Endopeptidase Complex Subunit C2,Proteasome C2,Proteasome Nu Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-3
Chain: F, T
Synonym: Macropain Subunit C8,Multicatalytic Endopeptidase Subunit C8,Proteasome Component C8;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-6
Chain: G, U
Synonym: 27 Kda Prosomal Protein,P27k,Macropain Iota Chain, Multicatalytic Endopeptidase Complex Iota Chain,Proteasome Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-7
Chain: H, V
Synonym: Macropain Chain Z,Multicatalytic Endopeptidase Com Z,Proteasome Subunit Z;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-3
Chain: I, W
Synonym: Proteasome Chain 13,Proteasome Component C10-II,Pr Theta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-2
Chain: J, X
Synonym: Macropain Subunit C7-I,Multicatalytic Endopeptidas Subunit C7-I,Proteasome Component C7-I;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-5
Chain: K, Y
Synonym: Macropain Epsilon Chain,Multicatalytic Endopeptida Epsilon Chain,Proteasome Chain 6,Proteasome Epsilon Chain,P Subunit Mb1,Proteasome Subunit X;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-1
Chain: L, Z
Synonym: Macropain Subunit C5,Multicatalytic Endopeptidase Subunit C5,Proteasome Component C5,Proteasome Gamma Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-4
Chain: M, a
Synonym: 26 Kda Prosomal Protein,Pros-26,Macropain Beta Cha Multicatalytic Endopeptidase Complex Beta Chain,Proteasome Chain,Proteasome Chain 3,Hsn3;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-6
Chain: N, b
Synonym: Macropain Delta Chain,Multicatalytic Endopeptidase Delta Chain,Proteasome Delta Chain,Proteasome Subunit Y;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-7
Chain: Q
Synonym: Proteasome Subunit Rc6-1,Proteasome Subunit Xapc7
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-1
Chain: S
Synonym: 30 Kda Prosomal Protein,Pros-30,Macropain Subunit Multicatalytic Endopeptidase Complex Subunit C2,Proteasome C2,Proteasome Nu Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 7
Chain: c
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt1,Proteasome Subunit Atpase 2,Protein Mss1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 4
Chain: d
Synonym: P26s4,26s Proteasome Aaa-Atpase Subunit Rpt2,Prote Subunit Atpase 1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 6b
Chain: e
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt3,Mb67-Intera Protein,Mip224,Proteasome 26s Subunit Atpase 4,Tat-Binding Tbp-7;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 10b
Chain: f
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt4,Proteasome Subunit Atpase 6,Proteasome Subunit P42;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 6a
Chain: g
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt5,Proteasome Subunit Atpase 3,Proteasome Subunit P50,Tat-Binding Protein

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 8
Chain: h
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt6,Proteasome Subunit Atpase 5,Proteasome Subunit P45,Thyroid Hormone Rec Interacting Protein 1,Trip1,P45sug;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 1
Chain: I
Synonym: 26s Proteasome Regulatory Subunit Rpn2,26s Proteas Regulatory Subunit S1,26s Proteasome Subunit P112;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 3
Chain: j
Synonym: 26s Proteasome Regulatory Subunit Rpn3,26s Proteas Regulatory Subunit S3,Proteasome Subunit P58;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 12
Chain: k
Synonym: 26s Proteasome Regulatory Subunit Rpn5,26s Proteas Regulatory Subunit P55;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 11
Chain: l
Synonym: 26s Proteasome Regulatory Subunit Rpn6,26s Proteas Regulatory Subunit S9,26s Proteasome Regulatory Subunit P44

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 6
Chain: m
Synonym: 26s Proteasome Regulatory Subunit Rpn7,26s Proteas Regulatory Subunit S10,Breast Cancer-Associated Protein Sga Phosphonoformate Immuno-Associated Protein 4,Proteasome Reg Particle Subunit P44s10,P42a;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 7
Chain: n
Synonym: 26s Proteasome Regulatory Subunit Rpn8,26s Proteas Regulatory Subunit S12,Mov34 Protein Homolog,Proteasome Sub

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 13
Chain: o
Synonym: 26s Proteasome Regulatory Subunit Rpn9,26s Proteas Regulatory Subunit S11,26s Proteasome Regulatory Subunit P4

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 4
Chain: p
Synonym: 26s Proteasome Regulatory Subunit Rpn10,26s Protea Regulatory Subunit S5a,Antisecretory Factor 1,Asf,Multiubiq Chain-Binding Protein;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 14
Chain: q
Synonym: 26s Proteasome Regulatory Subunit Rpn11,26s Protea Associated Pad1 Homolog 1;
Ec: 3.4.19.-

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 8
Chain: r
Synonym: 26s Proteasome Regulatory Subunit Rpn12,26s Protea Regulatory Subunit S14,P31;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Complex Subunit Sem1
Chain: s
Synonym: 26s Proteasome Complex Subunit Dss1,Deleted In Spl Handsplit Foot Protein 1,Split Handfoot Deleted Protein 1 Handfoot Malformation Type 1 Protein;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Bound Oprozomib
Chain: t, u
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand
enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, O


B, P


D, R


E


G, U
  • positive regulation of NF-ka...

  • H, V


    J, X


    K, Y


    N, b


    Q, C


    S


    T, F


    W, I


    Z, L


    a, M


    c
  • proteasome-activating ATPase...


  • d
  • proteasome-activating ATPase...


  • e
  • proteasome-activating ATPase...


  • f

  • proteasome complex
  • g


    h


    i
  • enzyme regulator activity


  • j
  • enzyme regulator activity


  • k


    l


    m
  • enzyme regulator activity


  • n


    o


    p


    q
  • endopeptidase activator acti...


  • r


    s


    Primary referenceLong-range allosteric regulation of the human 26S proteasome by 20S proteasome-targeting cancer drugs., Haselbach D, Schrader J, Lambrecht F, Henneberg F, Chari A, Stark H, Nat Commun. 2017 May 25;8:15578. doi: 10.1038/ncomms15578. PMID:28541292
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1445 Kb) [Save to disk]
  • Biological Unit Coordinates (5m32.pdb1.gz) 1407 Kb
  • CSU: Contacts of Structural Units for 5M32
  • Retrieve 5M32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M32 from S2C, [Save to disk]
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  • Dipole moment, from Dipole Server at Weizmann Institute
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  • Fold representative 5m32 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m32_X] [5m32_f] [5m32_j] [5m32_A] [5m32_b] [5m32_V] [5m32_p] [5m32_O] [5m32_s] [5m32_L] [5m32_Z] [5m32_i] [5m32_M] [5m32_K] [5m32_q] [5m32_P] [5m32_k] [5m32_U] [5m32_T] [5m32_r] [5m32_m] [5m32_C] [5m32_d] [5m32_W] [5m32_E] [5m32_e] [5m32_N] [5m32_B] [5m32_g] [5m32_Q] [5m32_h] [5m32_u] [5m32_S] [5m32_D] [5m32_I] [5m32_l] [5m32_c] [5m32_t] [5m32_a] [5m32_J] [5m32_o] [5m32_F] [5m32_n] [5m32_R] [5m32_G] [5m32_Y] [5m32_H]
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