5M49 Isomerase date Oct 18, 2016
title Alpha-Amino Epsilon-Caprolactam Racemase In Complex With Plp Alpha Amino Epsilon-Caprolactam (Internal Aldimine)
authors A.Frese, P.W.Sutton, J.P.Turkenburg, G.Grogan
compound source
Molecule: Aminotransferase Class-III
Chain: A
Engineered: Yes
 Organism_scientific: Rhizobium Freirei Prf 81
Organism_taxid: 363754
Gene: Rhsp_08934
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.161 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.696 77.679 57.602 90.00 112.68 90.00
method X-Ray Diffractionresolution 1.51 Å
ligand 7F4, 8F4, PLP enzyme
Gene RHSP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5m49.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5M49
  • CSU: Contacts of Structural Units for 5M49
  • Structure Factors (3667 Kb)
  • Retrieve 5M49 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M49 from S2C, [Save to disk]
  • Re-refined 5m49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M49
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m49] [5m49_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M49
  • Community annotation for 5M49 at PDBWiki (http://pdbwiki.org)

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