5M5I Motor Protein date Oct 21, 2016
title Pseudo-Atomic Model Of Microtubule-Bound S.Pombe Kinesin-5 M Domain In The Amppnp State (Based On Cryo-Electron Microsco Experiment): The N-Terminus Conformation Allows Formation O Neck Bundle.
authors A.Goulet, C.A.Moores, R.A.Cross
compound source
Molecule: Tubulin Alpha-1d Chain
Chain: A
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Tubulin Beta-2b Chain
Chain: B
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Kinesin-Like Protein Cut7
Chain: C
Synonym: Cell Untimely Torn Protein 7
Engineered: Yes
Organism_scientific: Schizosaccharomyces Pombe (Strain 972 24843);
Organism_common: Fission Yeast
Organism_taxid: 284812
Gene: Cut7, Spac25g10.07c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.30 Å
ligand ANP, GDP, GTP, MG, TA1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceSchizosaccharomyces pombe kinesin-5 switches direction using a steric blocking mechanism., Britto M, Goulet A, Rizvi S, von Loeffelholz O, Moores CA, Cross RA, Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):E7483-E7489. Epub 2016 Nov 9. PMID:27834216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (5m5i.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5M5I
  • CSU: Contacts of Structural Units for 5M5I
  • Retrieve 5M5I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M5I from S2C, [Save to disk]
    • View 5M5I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M5I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m5i] [5m5i_C] [5m5i_A] [5m5i_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5M5I: [KISc] [Tubulin] [Tubulin_C ] by SMART
    • Other resources with information on 5M5I
  • Community annotation for 5M5I at PDBWiki (http://pdbwiki.org)

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