5M6U	Transferase	date	Oct 26, 2016
title	Human Pi3kdelta In Complex With Lasw1579
authors	V.Segarra, B.Hernandez, E.Lozoya, M.Blaesse, S.Hoeppner, A.Jestel
compound		source
Molecule: Phosphatidylinositol 4,5-Bisphosphate 3-Kinase Ca Subunit Delta Isoform; Chain: A Fragment: N-Terminal Truncated Synonym: Ptdins-3-Kinase Subunit Delta,Phosphatidylinositol Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Delta,P110d Ec: 2.7.1.153 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pik3cd Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Phosphatidylinositol 3-Kinase Regulatory Subunit Chain: B Fragment: Unp Residues 431-599 Synonym: Ptdins-3-Kinase Regulatory Subunit Alpha, Phosphatidylinositol 3-Kinase 85 Kda Regulatory Subunit Alp 3-Kinase Regulatory Subunit P85-Alpha; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pik3r1, Grb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 21 21 21	R_factor 0.256 R_Free 0.309
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.493 113.212 144.321 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	7KA	enzyme	Transferase E.C.2.7.1.153 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Discovery of a Potent, Selective, and Orally Available PI3Kdelta Inhibitor for the Treatment of Inflammatory Diseases., Erra M, Taltavull J, Greco A, Bernal FJ, Caturla JF, Gracia J, Dominguez M, Sabate M, Paris S, Soria S, Hernandez B, Armengol C, Cabedo J, Bravo M, Calama E, Miralpeix M, Lehner MD, ACS Med Chem Lett. 2016 Nov 30;8(1):118-123. doi: 10.1021/acsmedchemlett.6b00438., eCollection 2017 Jan 12. PMID:28105286

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk] Biological Unit Coordinates (5m6u.pdb1.gz) 325 Kb LPC: Ligand-Protein Contacts for 5M6U CSU: Contacts of Structural Units for 5M6U Structure Factors (431 Kb) Retrieve 5M6U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5M6U from S2C, [Save to disk] Re-refined 5m6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5M6U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5M6U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5m6u] [5m6u_A] [5m6u_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5M6U

Community annotation for 5M6U at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---