5M7R Structure of human O-GlcNAc hydrolase date
authors Roth, C., Chan, S., Offen, W.A., Hemsworth, G.R., Willems, L.I., King, D., Varghese, V., Britton, R., Vocadlo, D.J., Davies, G.J.
compound source
R_Free 0.2489
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
A, B

Primary referenceStructural and functional insight into human O-GlcNAcase., Roth C, Chan S, Offen WA, Hemsworth GR, Willems LI, King DT, Varghese V, Britton R, Vocadlo DJ, Davies GJ, Nat Chem Biol. 2017 Mar 27. doi: 10.1038/nchembio.2358. PMID:28346405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (5m7r.pdb1.gz) 241 Kb
  • CSU: Contacts of Structural Units for 5M7R
  • Structure Factors (469 Kb)
  • Retrieve 5M7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M7R from S2C, [Save to disk]
  • Re-refined 5m7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5M7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5M7R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5m7r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m7r_B] [5m7r_A] [5m7r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5M7R
  • Community annotation for 5M7R at PDBWiki (http://pdbwiki.org)

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