5MF9 Splicing date Nov 17, 2016
title Solution Structure Of The Rbm5 Ocre Domain In Complex With P Smn Peptide.
authors A.Mourao, M.Sattler, S.Bonnal, S.Komal, L.Warner, R.Bordonne, J.Va
compound source
Molecule: Rna-Binding Protein 5
Chain: A
Fragment: Unp Residues 451-511
Synonym: Protein G15,Putative Tumor Suppressor Luca15,Rna-B Motif Protein 5,Renal Carcinoma Antigen Ny-Ren-9;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm5, H37, Luca15
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Survival Motor Neuron Protein
Chain: B
Synonym: Component Of Gems 1,Gemin-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smn1, Smn, Smnt, Smn2, Smnc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR

Primary referenceStructural basis for the recognition of spliceosomal SmN/B/B' proteins by the RBM5 OCRE domain in splicing regulation., Mourao A, Bonnal S, Soni K, Warner L, Bordonne R, Valcarcel J, Sattler M, Elife. 2016 Nov 29;5. pii: e14707. doi: 10.7554/eLife.14707. PMID:27894420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (5mf9.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 5MF9
  • Original NMR restraints for 5MF9 from PDB
  • Retrieve 5MF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MF9 from S2C, [Save to disk]
  • View 5MF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MF9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mf9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mf9_B] [5mf9] [5mf9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MF9
  • Community annotation for 5MF9 at PDBWiki (http://pdbwiki.org)

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