5MFY Splicing date Nov 19, 2016
title Rbm5 Ocre Domain
authors L.R.Warner, A.Mourao, K.Soni, M.Sattler
compound source
Molecule: Rna-Binding Protein 5
Chain: A
Fragment: Unp Residues 451-511
Synonym: Ocre,Protein G15,Putative Tumor Suppressor Luca15, Binding Motif Protein 5,Renal Carcinoma Antigen Ny-Ren-9;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm5, H37, Luca15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the recognition of spliceosomal SmN/B/B' proteins by the RBM5 OCRE domain in splicing regulation., Mourao A, Bonnal S, Soni K, Warner L, Bordonne R, Valcarcel J, Sattler M, Elife. 2016 Nov 29;5. pii: e14707. doi: 10.7554/eLife.14707. PMID:27894420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (5mfy.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 5MFY
  • Original NMR restraints for 5MFY from PDB
  • Retrieve 5MFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MFY from S2C, [Save to disk]
  • View 5MFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MFY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mfy] [5mfy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MFY
  • Community annotation for 5MFY at PDBWiki (http://pdbwiki.org)

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