5MGT Immune System date Nov 22, 2016
title Complex Of Human Nkr-P1 And Llt1 In Deglycosylated Forms
authors J.Blaha, T.Skalova, J.Stransky, T.Koval, J.Hasek, Z.Yuguang, K.Har O.Vanek, J.Dohnalek
compound source
Molecule: C-Type Lectin Domain Family 2 Member D
Chain: A, B
Synonym: Lectin-Like Transcript 1,Llt-1,Osteoclast Inhibito
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Natural Killer Cells, Activated Monocytes, B-Cells
Gene: Clec2d, Clax, Llt1, Ocil
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti-
Expression_system_atcc_number: Crl-3022
Expression_system_organ: Kidney
Expression_system_tissue: Human Embryonic Kidney
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptt28

Molecule: Killer Cell Lectin-Like Receptor Subfamily B Memb
Chain: C, D, E, F
Synonym: C-Type Lectin Domain Family 5 Member B,Hnkr-P1a,Nk Natural Killer Cell Surface Protein P1a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Natural Killer Cells, Nkt Cells, Th17 Cells
Gene: Klrb1, Clec5b, Nkrp1a
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti-
Expression_system_atcc_number: Crl-3022
Expression_system_organ: Kidney
Expression_system_tissue: Human Embryonic Kidney
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Popinggtneo
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.580 80.150 272.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (5mgt.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (5mgt.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (5mgt.pdb3.gz) 49 Kb
  • CSU: Contacts of Structural Units for 5MGT
  • Structure Factors (2970 Kb)
  • Retrieve 5MGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MGT from S2C, [Save to disk]
  • View 5MGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MGT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mgt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mgt_C] [5mgt_B] [5mgt_D] [5mgt_A] [5mgt_F] [5mgt_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MGT
  • Community annotation for 5MGT at PDBWiki (http://pdbwiki.org)

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