5MIM Hydrolase date Nov 28, 2016
title Xray Structure Of Human Furin Bound With The 2,5-Dideoxystre Derived Small Molecule Inhibitor 1n
authors S.O.Dahms, J.Guan-Sheng, M.E.Than
compound source
Molecule: Furin
Chain: A
Synonym: Dibasic-Processing Enzyme,Paired Basic Amino Acid Cleaving Enzyme,Pace;
Ec: 3.4.21.75
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Furin, Fur, Pace, Pcsk3
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
symmetry Space Group: P 65 2 2
R_factor 0.165 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.204 132.204 155.727 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1N, CA, CL, NA enzyme Hydrolase E.C.3.4.21.75 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Studies Revealed Active Site Distortions of Human Furin by a Small Molecule Inhibitor., Dahms SO, Jiao GS, Than ME, ACS Chem Biol. 2017 Apr 17. doi: 10.1021/acschembio.6b01110. PMID:28402100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5mim.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 5MIM
  • CSU: Contacts of Structural Units for 5MIM
  • Structure Factors (453 Kb)
  • Retrieve 5MIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MIM from S2C, [Save to disk]
  • Re-refined 5mim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MIM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mim_A] [5mim]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MIM
  • Community annotation for 5MIM at PDBWiki (http://pdbwiki.org)

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