5MJ0 Immune System date Nov 29, 2016
title Extracellular Domain Of Human Cd83 - Cubic Crystal Form
authors S.Klingl, C.Egerer-Sieber, B.Schmid, Y.A.Muller
compound source
Molecule: Cd83 Antigen
Chain: A, B
Synonym: Hcd83,B-Cell Activation Protein,Cell Surface Prote
Engineered: Yes
Mutation: Yes
Other_details: The First Four Residues (Gspg) Are Non-Nativ Of The Linker Which Remains After The Gst-Tag Was Cleaved O First And Last Two Residues As Well As The Central Region W Visible In The Electron Density Maps.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Dendritic Cells
Gene: Cd83
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: I 41 3 2
R_factor 0.237 R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
149.564 149.564 149.564 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Primary referenceCrystal structure of the extracellular domain of the human dendritic cell surface marker CD83., Heilingloh CS, Klingl S, Egerer-Sieber C, Schmid B, Weiler S, Muhl-Zurbes P, Hofmann J, Stump JD, Sticht H, Kummer M, Steinkasserer A, Muller YA, J Mol Biol. 2017 Mar 14. pii: S0022-2836(17)30113-4. doi:, 10.1016/j.jmb.2017.03.009. PMID:28315353
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5mj0.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 5MJ0
  • Structure Factors (32 Kb)
  • Retrieve 5MJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MJ0 from S2C, [Save to disk]
  • Re-refined 5mj0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MJ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mj0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mj0_A] [5mj0_B] [5mj0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MJ0
  • Community annotation for 5MJ0 at PDBWiki (http://pdbwiki.org)

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