5MK3 Hydrolase date Dec 02, 2016
title Crystal Structure Of The His Domain Protein Tyrosine Phospha Ptpptpn23) Bro 1 Domain (Chmp4c Peptide Complex Structure)
authors C.Levy
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 23
Chain: A, B, C, D
Synonym: His Domain-Containing Protein Tyrosine Phosphatase Protein Tyrosine Phosphatase Td14,Ptp-Td14;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn23, Kiaa1471
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Charged Multivesicular Body Protein 4c
Chain: E, F, G, H
Synonym: Chromatin-Modifying Protein 4c,Chmp4c,Snf7 Homolog Associated With Alix 3,Snf7-3,Hsnf7-3,Vacuolar Protein Sort Associated Protein 32-3,Hvps32-3;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.198 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.436 70.835 79.291 90.54 98.22 106.82
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Primary referenceStructural Basis for Specific Interaction of TGFbeta Signaling Regulators SARA/Endofin with HD-PTP., Gahloth D, Levy C, Walker L, Wunderley L, Mould AP, Taylor S, Woodman P, Tabernero L, Structure. 2017 Jul 5;25(7):1011-1024.e4. doi: 10.1016/j.str.2017.05.005. Epub, 2017 Jun 8. PMID:28602823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (5mk3.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (5mk3.pdb2.gz) 65 Kb
  • Biological Unit Coordinates (5mk3.pdb3.gz) 64 Kb
  • Biological Unit Coordinates (5mk3.pdb4.gz) 63 Kb
  • CSU: Contacts of Structural Units for 5MK3
  • Structure Factors (2807 Kb)
  • Retrieve 5MK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MK3 from S2C, [Save to disk]
  • View 5MK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MK3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mk3_C] [5mk3_D] [5mk3_G] [5mk3_A] [5mk3_B] [5mk3_E] [5mk3_F] [5mk3_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MK3
  • Community annotation for 5MK3 at PDBWiki (http://pdbwiki.org)

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