5MLU Dna Binding Protein date Dec 07, 2016
title Crystal Structure Of The Pfv Gag Cbs Bound To A Mononucleoso
authors V.E.Pye, D.P.Maskell, P.Lesbats, P.Cherepanov
compound source
Molecule: Histone H3.2
Chain: A, E
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1
Chain: C, G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: D
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: H
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pfv Gag Peptide
Chain: M
Engineered: Yes

Organism_scientific: Simian Foamy Virus
Organism_taxid: 11642
Expression_system: Synthetic Construct
Expression_system_taxid: 32630

Molecule: Dna (145-Mer)
Chain: I
Other_details: Widom 601

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (145-Mer)
Chain: J
Other_details: Widom 601

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.260 109.450 175.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


M


Primary referenceStructural basis for spumavirus GAG tethering to chromatin., Lesbats P, Serrao E, Maskell DP, Pye VE, O'Reilly N, Lindemann D, Engelman AN, Cherepanov P, Proc Natl Acad Sci U S A. 2017 May 10. pii: 201621159. doi:, 10.1073/pnas.1621159114. PMID:28490494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk]
  • Biological Unit Coordinates (5mlu.pdb1.gz) 524 Kb
  • LPC: Ligand-Protein Contacts for 5MLU
  • CSU: Contacts of Structural Units for 5MLU
  • Structure Factors (883 Kb)
  • Retrieve 5MLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MLU from S2C, [Save to disk]
  • Re-refined 5mlu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MLU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mlu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mlu_M] [5mlu_H] [5mlu_B] [5mlu_G] [5mlu_D] [5mlu] [5mlu_C] [5mlu_I] [5mlu_A] [5mlu_E] [5mlu_J] [5mlu_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MLU
  • Community annotation for 5MLU at PDBWiki (http://pdbwiki.org)

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