5MMA	Viral Protein	date	Dec 09, 2016
title	Crystal Structure Of The Prototype Foamy Virus (Pfv) Intasom Complex With Magnesium And The Insti Xz379 (Compound 5'G)
authors	D.P.Maskell, V.E.Pye, P.Cherepanov
compound		source
Molecule: Integrase Chain: A, B Synonym: Pr125pol Ec: 2.7.7.49,2.7.7.7,3.1.26.4,3.4.23.-,2.7.7.-,3.1.-.- Engineered: Yes Other_details: G217s, S218g = Natural Variance		Organism_scientific: Human Spumaretrovirus Organism_common: Sfvcpz(Hu) Organism_taxid: 11963 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'- D(Aptptpgptpcpaptpgpgpapaptptptpcpgpcpa) Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Tpgpcpgpapapaptptpcpcpaptpgpapcpa)-3'); Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 41 21 2	R_factor 0.179 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.570 159.570 124.140 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	GOL, HEZ, MES, MG, SO4, VHT, ZN	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-Guided Optimization of HIV Integrase Strand Transfer Inhibitors., Zhao XZ, Smith SJ, Maskell DP, Metifiot M, Pye VE, Fesen K, Marchand C, Pommier Y, Cherepanov P, Hughes SH, Burke TR, J Med Chem. 2017 Jul 24. doi: 10.1021/acs.jmedchem.7b00596. PMID:28737946

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk] Biological Unit Coordinates (5mma.pdb1.gz) 436 Kb LPC: Ligand-Protein Contacts for 5MMA CSU: Contacts of Structural Units for 5MMA Structure Factors (845 Kb) Retrieve 5MMA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MMA from S2C, [Save to disk] Re-refined 5mma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MMA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MMA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mma_A] [5mma_C] [5mma_B] [5mma_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5MMA

Community annotation for 5MMA at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---