5MO8 Transferase date Dec 13, 2016
title Crystal Structure Of Ck2alpha With N-(3-(((2-Chloro-[1,1'-Bi Yl)Methyl)Amino)Propyl)Methanesulfonamide Bound
authors P.Brear, C.De Fusco, K.Georgiou, J.Iegre, H.Sore, M.Hyvonen, D.Spr
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A, B
Fragment: Residues 2-329 And N-Terminal Extension Gsmdiefdddadddgsgsgsgsgs;
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_vector: Phat4
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.596 67.495 334.921 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand ACT, C98, PO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA fragment-based approach leading to the discovery of a novel binding site and the selective CK2 inhibitor CAM4066., De Fusco C, Brear P, Iegre J, Georgiou KH, Sore HF, Hyvonen M, Spring DR, Bioorg Med Chem. 2017 Apr 30. pii: S0968-0896(16)31479-1. doi:, 10.1016/j.bmc.2017.04.037. PMID:28495381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (5mo8.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (5mo8.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 5MO8
  • CSU: Contacts of Structural Units for 5MO8
  • Structure Factors (2875 Kb)
  • Retrieve 5MO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MO8 from S2C, [Save to disk]
  • Re-refined 5mo8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MO8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mo8] [5mo8_B] [5mo8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MO8
  • Community annotation for 5MO8 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science