5MPI Transcription date Dec 16, 2016
title Structural Basis Of Gene Regulation By The Grainyhead Transc Factor Superfamily
authors Q.Ming, Y.Roske, A.Schuetz, K.Walentin, I.Ibraimi, K.M.Schmidt-Ot U.Heinemann
compound source
Molecule: Grainyhead-Like Protein 1 Homolog
Chain: A
Synonym: Mammalian Grainyhead,Nh32,Transcription Factor Cp2 Transcription Factor Lbp-32;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grhl1, Lbp32, Mgr, Tfcp2l2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.222 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.405 104.405 116.254 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of gene regulation by the Grainyhead/CP2 transcription factor family., Ming Q, Roske Y, Schuetz A, Walentin K, Ibraimi I, Schmidt-Ott KM, Heinemann U, Nucleic Acids Res. 2018 Jan 4. pii: 4788346. doi: 10.1093/nar/gkx1299. PMID:29309642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (5mpi.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 5MPI
  • Structure Factors (99 Kb)
  • Retrieve 5MPI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MPI from S2C, [Save to disk]
    • View 5MPI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MPI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mpi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MPI
  • Community annotation for 5MPI at PDBWiki (http://pdbwiki.org)

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