5MPR Transferase date Dec 18, 2016
title Single Amino Acid Variant Of Human Mitochondrial Branched Ch Acid Aminotransferase 2
authors M.Hakansson, B.Walse, C.Nilsson, L.C.Anderson
compound source
Molecule: Branched-Chain-Amino-Acid Aminotransferase, Mitoc
Chain: A
Synonym: Bcat(M),Placental Protein 18,Pp18
Ec: 2.6.1.42
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcat2, Bcatm, Bct2, Eca40
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.128 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.032 84.032 105.446 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand EDO, PLP enzyme Transferase E.C.2.6.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntact Protein Analysis at 21 Tesla and X-Ray Crystallography Define Structural Differences in Single Amino Acid Variants of Human Mitochondrial Branched-Chain Amino Acid Aminotransferase 2 (BCAT2)., Anderson LC, Hakansson M, Walse B, Nilsson CL, J Am Soc Mass Spectrom. 2017 Jul 5. doi: 10.1007/s13361-017-1705-0. PMID:28681360
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (5mpr.pdb1.gz) 272 Kb
  • LPC: Ligand-Protein Contacts for 5MPR
  • CSU: Contacts of Structural Units for 5MPR
  • Structure Factors (1528 Kb)
  • Retrieve 5MPR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MPR from S2C, [Save to disk]
  • Re-refined 5mpr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MPR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MPR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mpr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MPR
  • Community annotation for 5MPR at PDBWiki (http://pdbwiki.org)

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