5MPS | Splicing | date | Dec 18, 2016 |
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title | Structure Of A Spliceosome Remodeled For Exon Ligation | ||||||||||||||
authors | S.M.Fica, C.Oubridge, W.P.Galej, M.E.Wilkinson, A.J.Newman, X.C. K.Nagai | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Yeast Ubc4 Gene For Ubiquitin-Conjugating Enzyme Chain: I Engineered: Yes Other_details: Saccharomyces Cerevisiae Ubc4 Pre-Mrna Intro Vitro Transcribed.; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: In Vitro Transcription Vector Pt7-Fluc(D Expression_system_taxid: 905932 | ||||||||||||||
Molecule: Ubc4 Gene Exon Chain: E Engineered: Yes Other_details: Saccharomyces Cerevisiae Ubc4 Pre-Mrna Exon, Transcribed.; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Ubc4 Expression_system: In Vitro Transcription Vector Pt7-Fluc(D Expression_system_taxid: 905932 | ||||||||||||||
Molecule: U2 Snrna Chain: 2 Engineered: Yes Other_details: Saccharomyces Cerevisiae U2 Snrna |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Saccharomyces Cerevisiae Strain T.52_2h Chromosom Sequence; Chain: 6 Engineered: Yes Other_details: Saccharomyces Cerevisiae U6 Snrna |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 | ||||||||||||||
Molecule: U5 Snrna Chain: 5 Engineered: Yes Other_details: Saccharomyces Cerevisiae U5 Snrna |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor 8 Chain: A Other_details: Saccharomyces Cerevisiae Prp8 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Snu114 Chain: C Synonym: 114 Kda U5 Small Nuclear Ribonucleoprotein Compone Inhibitory Protein 10; Other_details: C Snu114 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Cwc22 Chain: H Synonym: Complexed With Cef1 Protein 22 Other_details: Saccharomyces Cerevisiae Cwc22 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Prp46 Chain: J Synonym: Complexed With Cef1 Protein 1,Prp Nineteen-Associa Complex Protein 50,Prp19-Associated Complex Protein 50,Pre- Processing Protein 46; Other_details: Saccharomyces Cerevisiae Prp46 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Processing Protein 45 Chain: K Other_details: Saccharomyces Cerevisiae Prp45 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Bud31 Chain: L Synonym: Bud Site Selection Protein 31,Complexed With Cef1 14; Other_details: Saccharomyces Cerevisiae Bud31 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Cwc2 Chain: M Synonym: Complexed With Cef1 Protein 2,Prp19-Associated Com Protein 40,Synthetic Lethal With Clf1 Protein 3; Other_details: Saccharomyces Cerevisiae Cwc2 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Slt11 Chain: N Synonym: Extracellular Mutant Protein 2,Synthetic Lethality Protein 11; Other_details: Saccharomyces Cerevisiae Ecm2 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Cef1 Chain: O Synonym: Prp Nineteen-Associated Complex Protein 85,Prp19-A Complex Protein 85; Other_details: Saccharomyces Cerevisiae Cef1 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Cwc15 Chain: P Synonym: Complexed With Cef1 Protein 15 Other_details: Saccharomyces Cerevisiae Cwc15 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Cwc21 Chain: R Synonym: Complexed With Cef1 Protein 21 Other_details: Saccharomyces Cerevisiae Cwc21 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Clf1 Chain: S Synonym: Crooked Neck-Like Factor 1,Prp19-Associated Comple 77,Synthetic Lethal With Cdc40 Protein 3; Other_details: Saccharomyces Cerevisiae Clf1 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Syf1 Chain: T Synonym: Prp19-Associated Complex Protein 90,Synthetic Leth Cdc40 Protein 1; Other_details: Saccharomyces Cerevisiae Syf1 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor 18 Chain: a Other_details: Saccharomyces Cerevisiae Prp18 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Slu7 Chain: c Synonym: Synthetic Lethal With U2 Snrna Protein 17,Syntheti With U5 Snrna Protein 7; Other_details: Saccharomyces Cerevisiae Slu7 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Processing Factor 17 Chain: o Synonym: Cell Division Control Protein 40 Other_details: Saccharomyces Cerevisiae Prp17 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Unknown Chain: X Other_details: Unknown Protein Helices Within C-Star Comple |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Syf2 Chain: y Synonym: Prp19 Complex Protein 31,Synthetic Lethal With Cdc 2; Other_details: Saccharomyces Cerevisiae Syf2 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein-Associated Protei Chain: b Synonym: Snrnp-B,Sm Protein B,Smb Other_details: Saccharomyces Cerevisiae Smb Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D3 Chain: d Synonym: Sm-D3,Snrnp Core Protein D3 Other_details: Saccharomyces Cerevisiae Smd3 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein E Chain: e Synonym: Snrnp-E,Sm Protein E,Sme Other_details: Saccharomyces Cerevisiae Sme Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein F Chain: f Synonym: Snrnp-F,Sm Protein F,Smf Other_details: Saccharomyces Cerevisiae Smf Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein G Chain: g Synonym: Snrnp-G,Sm Protein G,Smg Other_details: Saccharomyces Cerevisiae Smg Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D1 Chain: h Synonym: Sm-D1,Snrnp Core Protein D1 Other_details: Saccharomyces Cerevisiae Smd1 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
Molecule: Small Nuclear Ribonucleoprotein Sm D2 Chain: j Synonym: Sm-D2,Snrnp Core Protein D2 Other_details: Saccharomyces Cerevisiae Smd2 Protein |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 3.85 Å | ||||||||||||
ligand | GTP, IHP, K, MG, ZN | enzyme |
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Gene Ontology | |||||||||||||||
Primary reference | Structure of a spliceosome remodelled for exon ligation., Fica SM, Oubridge C, Galej WP, Wilkinson ME, Bai XC, Newman AJ, Nagai K, Nature. 2017 Jan 11. doi: 10.1038/nature21078. PMID:28076345 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |