OCA Atlas for 5MPS

5MPS

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GTP, IHP, K, MG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A	metallopeptidase activity
C
H
J
K			U2-type catalytic step 1 spl... U2-type catalytic step 2 spl...
L
M			U2-type catalytic step 1 spl... U2-type catalytic step 2 spl...
N
O			U2-type catalytic step 1 spl...
P
R
S			U2-type catalytic step 1 spl... U2-type catalytic step 2 spl...
T			U2-type catalytic step 1 spl... U2-type catalytic step 2 spl...
a
b
c
d
e
f
g
h
j
o
y			U2-type catalytic step 1 spl... U2-type catalytic step 2 spl...

Primary reference

Structure of a spliceosome remodelled for exon ligation., Fica SM, Oubridge C, Galej WP, Wilkinson ME, Bai XC, Newman AJ, Nagai K, Nature. 2017 Jan 11. doi: 10.1038/nature21078. PMID:28076345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1217 Kb) [Save to disk]

Biological Unit Coordinates (5mps.pdb1.gz) 1186 Kb

LPC: Ligand-Protein Contacts for 5MPS

CSU: Contacts of Structural Units for 5MPS

Retrieve 5MPS in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5MPS from S2C, [Save to disk]

View 5MPS in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mps] [5mps_2] [5mps_5] [5mps_6] [5mps_A] [5mps_C] [5mps_E] [5mps_H] [5mps_I] [5mps_J] [5mps_K] [5mps_L] [5mps_M] [5mps_N] [5mps_O] [5mps_P] [5mps_R] [5mps_S] [5mps_T] [5mps_X] [5mps_a] [5mps_b] [5mps_c] [5mps_d] [5mps_e] [5mps_f] [5mps_g] [5mps_h] [5mps_j] [5mps_o] [5mps_y]

SWISS-PROT database:

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