5MR8 Transcription date Dec 21, 2016
title Crystal Structure Of Trim33 Phd-Bromodomain Isoform B In Com H3k9ac Histone Peptide
authors C.Tallant, P.Savitsky, O.Fedorov, G.Nunez-Alonso, P.Siejka, T.Kro E.Williams, V.Srikannathasan, F.Von Delft, C.H.Arrowsmith, A.M. C.Bountra, S.Muller, S.Knapp, Structural Genomics Consortium (
compound source
Molecule: E3 Ubiquitin-Protein Ligase Trim33
Chain: A
Fragment: Unp Residues 882-1073
Synonym: Ectodermin Homolog,Ret-Fused Gene 7 Protein,Protei Transcription Intermediary Factor 1-Gamma,Tif1-Gamma,Tripar Motif-Containing Protein 33;
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim33, Kiaa1113, Rfg7, Tif1g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Histone H3
Chain: C
Fragment: Unp Residues 2-10
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.885 57.994 71.488 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand ALY, ZN enzyme Ligase E.C.6.3.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (5mr8.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 5MR8
  • CSU: Contacts of Structural Units for 5MR8
  • Structure Factors (534 Kb)
  • Retrieve 5MR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MR8 from S2C, [Save to disk]
    • View 5MR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MR8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mr8_C] [5mr8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MR8
  • Community annotation for 5MR8 at PDBWiki (http://pdbwiki.org)

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