5MRA Metal Binding Protein date Dec 22, 2016
title Human Scbd (Sorcin Calcium Binding Domain) In Complex With D
authors A.Ilari, A.Fiorillo, G.Colotti, I.Genovese
compound source
Molecule: Sorcin
Chain: A, B, C, D
Synonym: 22 Kda Protein,Cp-22,Cp22,V19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sri
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.229 104.831 113.273 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.74 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBinding of doxorubicin to Sorcin impairs cell death and increases drug resistance in cancer cells., Genovese I, Fiorillo A, Ilari A, Masciarelli S, Fazi F, Colotti G, Cell Death Dis. 2017 Jul 20;8(7):e2950. doi: 10.1038/cddis.2017.342. PMID:28726784
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (5mra.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (5mra.pdb2.gz) 55 Kb
  • CSU: Contacts of Structural Units for 5MRA
  • Structure Factors (335 Kb)
  • Retrieve 5MRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MRA from S2C, [Save to disk]
  • View 5MRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MRA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mra from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mra_D] [5mra_B] [5mra_A] [5mra_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MRA
  • Community annotation for 5MRA at PDBWiki (http://pdbwiki.org)

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