5MS0 Transcription Dna Rna date Dec 29, 2016
title Pseudo-Atomic Model Of The Rna Polymerase Lambda-Based Antit Complex Solved By Cryo-Em
authors N.Said, F.Krupp
compound source
Molecule: Antitermination Protein N
Chain: N
Synonym: Regulatory Protein N,Pn
Engineered: Yes
Other_details: Lambda N Factor
Organism_scientific: Escherichia Phage Lambda
Organism_common: Bacteriophage Lambda
Organism_taxid: 10710
Gene: N, Lambdap49
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nascent Rna
Chain: R
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpob, Gron, Nitb, Rif, Ron, Stl, Stv, Tabd, B3987, Jw
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpoc, Tabb, B3988, Jw3951
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S10
Chain: E
Synonym: Small Ribosomal Subunit Protein Us10
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpsj, Nuse, B3321, Jw3283
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Terminationantitermination Protein
Chain: F
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Nusg, B3982, Jw3945
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna Transcription Bubble
Chain: H
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dnai
Chain: I
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dnaii
Chain: J
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Antitermination Protein Nusb
Chain: L
Synonym: Antitermination Factor Nusb,N Utilization Substanc B;
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Nusb, Gronb, Ssyb, B0416, Jw0406
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Terminationantitermination Protein
Chain: M
Synonym: N Utilization Substance Protein A,Transcription Terminationantitermination L Factor;
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Nusa, B3169, Jw3138
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: O
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpoz, B3649, Jw3624
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.80 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene AKG99 ; ECS88
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F


L


M


O


Primary referenceStructural basis for lambdaN-dependent processive transcription antitermination., Said N, Krupp F, Anedchenko E, Santos KF, Dybkov O, Huang YH, Lee CT, Loll B, Behrmann E, Burger J, Mielke T, Loerke J, Urlaub H, Spahn CMT, Weber G, Wahl MC, Nat Microbiol. 2017 Apr 28;2:17062. doi: 10.1038/nmicrobiol.2017.62. PMID:28452979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (440 Kb) [Save to disk]
  • Biological Unit Coordinates (5ms0.pdb1.gz) 411 Kb
  • LPC: Ligand-Protein Contacts for 5MS0
  • CSU: Contacts of Structural Units for 5MS0
  • Retrieve 5MS0 in mmCIF format [Save to disk]
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  • Visual 3D analysis of 5MS0
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ms0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ms0] [5ms0_F] [5ms0_D] [5ms0_A] [5ms0_H] [5ms0_M] [5ms0_I] [5ms0_O] [5ms0_J] [5ms0_N] [5ms0_R] [5ms0_L] [5ms0_C] [5ms0_B] [5ms0_E]
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