5MUE Transport Protein date Jan 13, 2017
title Self-Assembled Alpha-Tocopherol Transfer Protein Nanoparticl Vitamin E Delivery Across An Endothelial Barrier
authors A.Stocker, W.Aeschimann
compound source
Molecule: Alpha-Tocopherol Transfer Protein
Chain: A
Synonym: Alpha-Ttp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttpa, Tpp1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: I 4 3 2
R_factor 0.182 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.184 168.184 168.184 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, ETA, SO4, VIV enzyme
Primary referenceSelf-assembled alpha-Tocopherol Transfer Protein Nanoparticles Promote Vitamin E Delivery Across an Endothelial Barrier., Aeschimann W, Staats S, Kammer S, Olieric N, Jeckelmann JM, Fotiadis D, Netscher T, Rimbach G, Cascella M, Stocker A, Sci Rep. 2017 Jul 10;7(1):4970. doi: 10.1038/s41598-017-05148-9. PMID:28694484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5mue.pdb1.gz) 1896 Kb
  • LPC: Ligand-Protein Contacts for 5MUE
  • CSU: Contacts of Structural Units for 5MUE
  • Structure Factors (279 Kb)
  • Retrieve 5MUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MUE from S2C, [Save to disk]
  • Re-refined 5mue structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MUE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mue_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MUE
  • Community annotation for 5MUE at PDBWiki (http://pdbwiki.org)

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