5MVX Signaling Protein date Jan 17, 2017
title Human Dll4 C2-Egf3
authors R.J.Suckling, P.A.Handford, S.M.Lea
compound source
Molecule: Delta-Like Protein 4
Chain: A
Synonym: Drosophila Delta Homolog 4,Delta4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dll4, Unq1895pro4341
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell: Schneider 2
Expression_system_plasmid: Pexs2-2
symmetry Space Group: C 1 2 1
R_factor 0.182 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.896 49.753 70.031 90.00 109.15 90.00
method X-Ray Diffractionresolution 2.17 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional dissection of the interplay between lipid and Notch binding by human Notch ligands., Suckling RJ, Korona B, Whiteman P, Chillakuri C, Holt L, Handford PA, Lea SM, EMBO J. 2017 Aug 1;36(15):2204-2215. doi: 10.15252/embj.201796632. Epub 2017 Jun , 1. PMID:28572448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5mvx.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 5MVX
  • Structure Factors (879 Kb)
  • Retrieve 5MVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MVX from S2C, [Save to disk]
  • Re-refined 5mvx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MVX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mvx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mvx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MVX
  • Community annotation for 5MVX at PDBWiki (http://pdbwiki.org)

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