5MY1 Ribosome date Jan 25, 2017
title E. Coli Expressome
authors R.Kohler, R.A.Mooney, D.J.Mills, D.Kostrewa, R.Landick, P.Cramer
compound source
Molecule: 16s Ribosomal Rna
Chain: A
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S3
Chain: C

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S4
Chain: D

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S5
Chain: E

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S6
Chain: F

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S7
Chain: G

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S8
Chain: H

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S9
Chain: I

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S10
Chain: J

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S11
Chain: K

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S12
Chain: L

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S13
Chain: M

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S14
Chain: N

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S15
Chain: O

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S16
Chain: P

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S17
Chain: Q

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S18
Chain: R

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S19
Chain: S

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S20
Chain: T

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S2
Chain: B

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: 30s Ribosomal Protein S21
Chain: U

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333

Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: V, W
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: X
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpob, Ecdh10b_4175
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: Y
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpoc, Tabb, B3988, Jw3951
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: Z
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Rpoz, Ecdh10b_3831
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.60 Å
ligand ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene ECDH10B ; ECDH10B
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O
  • mRNA binding involved in pos...


  • P
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


  • Q


    R


    S


    T
  • ornithine decarboxylase inhi...


  • U


    V, W


    X


    Y


    Z


    Primary referenceArchitecture of a transcribing-translating expressome., Kohler R, Mooney RA, Mills DJ, Landick R, Cramer P, Science. 2017 Apr 14;356(6334):194-197. doi: 10.1126/science.aal3059. PMID:28408604
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1223 Kb) [Save to disk]
  • Biological Unit Coordinates (5my1.pdb1.gz) 1204 Kb
  • LPC: Ligand-Protein Contacts for 5MY1
  • CSU: Contacts of Structural Units for 5MY1
  • Retrieve 5MY1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MY1 from S2C, [Save to disk]
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  • Dipole moment, from Dipole Server at Weizmann Institute
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  • Fold representative 5my1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5my1_D] [5my1_A] [5my1_V] [5my1_B] [5my1_Q] [5my1_N] [5my1_P] [5my1_H] [5my1_E] [5my1_S] [5my1_X] [5my1_W] [5my1_F] [5my1] [5my1_O] [5my1_J] [5my1_R] [5my1_C] [5my1_L] [5my1_T] [5my1_Y] [5my1_K] [5my1_Z] [5my1_M] [5my1_I] [5my1_U] [5my1_G]
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