5N06 Signaling Protein date Feb 02, 2017
title Crystal Structure Of Tie1 Fibronectin-Like Domain 3
authors V.M.Leppanen, P.Saharinen, K.Alitalo
compound source
Molecule: Tyrosine-Protein Kinase Receptor Tie-1
Chain: A, B
Ec: 2.7.10.1
Engineered: Yes
Other_details: The Sequence Includes N-Terminal Mellitin Si Peptide, Cloning Artefect (Adp) And C-Terminal His-Tag.
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tie1, Tie
Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014
Expression_system_common: Fall Armyworm
Expression_system_taxid: 1491790
symmetry Space Group: P 65
R_factor 0.244 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.054 54.054 107.270 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceStructural basis of Tie2 activation and Tie2/Tie1 heterodimerization., Leppanen VM, Saharinen P, Alitalo K, Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):4376-4381. doi:, 10.1073/pnas.1616166114. Epub 2017 Apr 10. PMID:28396439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (5n06.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 5N06
  • Structure Factors (34 Kb)
  • Retrieve 5N06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N06 from S2C, [Save to disk]
  • Re-refined 5n06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5N06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5N06
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n06_B] [5n06_A] [5n06]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5N06
  • Community annotation for 5N06 at PDBWiki (http://pdbwiki.org)

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