5N5N Structural Protein date Feb 14, 2017
title Cryo-Em Structure Of Tsa201 Cell Alpha1b And Betai And Betai Microtubules
authors A.Vemu, J.Atherton, J.O.Spector, C.A.Moores, A.Roll-Mecak
compound source
Molecule: Tubulin Beta Chain
Chain: B, A, C, D, E, F
Synonym: Tubulin Beta-5 Chain
Engineered: Yes
Other_details: Gmpcpp (Gtp-Analogue) Bound
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Tsa201 Cells
Gene: Tubb, Tubb5, Oksw-Cl.56
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Tsa201 Cells

Molecule: Tubulin Alpha-1b Chain
Chain: K, G, H, I, J, L
Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;
Engineered: Yes
Other_details: Gtp-Bound

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Tsa201 Cells
Gene: Tuba1b
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Tsa201 Cells
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand G2P, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D


J, K, H, I, G, L


Primary referenceTubulin isoform composition tunes microtubule dynamics., Vemu A, Atherton J, Spector JO, Moores CA, Roll-Mecak A, Mol Biol Cell. 2017 Oct 11. pii: mbc.E17-02-0124. doi: 10.1091/mbc.E17-02-0124. PMID:29021343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (813 Kb) [Save to disk]
  • Biological Unit Coordinates (5n5n.pdb1.gz) 806 Kb
  • LPC: Ligand-Protein Contacts for 5N5N
  • CSU: Contacts of Structural Units for 5N5N
  • Retrieve 5N5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N5N from S2C, [Save to disk]
  • View 5N5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N5N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n5n_E] [5n5n_D] [5n5n_H] [5n5n_C] [5n5n_I] [5n5n_B] [5n5n_G] [5n5n_K] [5n5n_L] [5n5n_F] [5n5n_J] [5n5n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N5N
  • Community annotation for 5N5N at PDBWiki (http://pdbwiki.org)

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