5N5R Signaling Protein date Feb 14, 2017
title 14-3-3 Sigma In Complex With Taz Ps89 Peptide And Fragment N
authors E.Sijbesma, S.Leysen, C.Ottmann
compound source
Molecule: 14-3-3 Protein Sigma
Chain: A
Synonym: Epithelial Cell Marker Protein 1,Stratifin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sfn, Hme1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Taz Ps89 Peptide
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.149 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.962 111.974 62.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, MG, NV1, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein kinase C inhibitor a...
  • positive regulation of prote...

  • Primary referenceIdentification of Two Secondary Ligand Binding Sites in 14-3-3 Proteins Using Fragment Screening., Sijbesma E, Skora L, Leysen S, Brunsveld L, Koch U, Nussbaumer P, Jahnke W, Ottmann C, Biochemistry. 2017 Aug 1;56(30):3972-3982. doi: 10.1021/acs.biochem.7b00153. Epub, 2017 Jul 21. PMID:28681606
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (5n5r.pdb1.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 5N5R
  • CSU: Contacts of Structural Units for 5N5R
  • Structure Factors (1133 Kb)
  • Retrieve 5N5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N5R from S2C, [Save to disk]
  • Re-refined 5n5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5N5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N5R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n5r_P] [5n5r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N5R
  • Community annotation for 5N5R at PDBWiki (http://pdbwiki.org)

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