5N6R Signaling Protein date Feb 16, 2017
title Solution Structure Of The Dbl-Homology Domain Of Bcr-Abl
authors S.Reckel, F.Lohr, L.Buchner, P.Guntert, V.Dotsch, O.Hantschel
compound source
Molecule: Breakpoint Cluster Region Protein
Chain: A
Fragment: Dh Domain, Unp Residues 487-702
Synonym: Renal Carcinoma Antigen Ny-Ren-26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcr, Bcr1, D22s11
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
methodSolution NMR
enzyme Transferase E.C. BRENDA

Primary referenceStructural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase., Reckel S, Gehin C, Tardivon D, Georgeon S, Kukenshoner T, Lohr F, Koide A, Buchner L, Panjkovich A, Reynaud A, Pinho S, Gerig B, Svergun D, Pojer F, Guntert P, Dotsch V, Koide S, Gavin AC, Hantschel O, Nat Commun. 2017 Dec 13;8(1):2101. doi: 10.1038/s41467-017-02313-6. PMID:29235475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1167 Kb) [Save to disk]
  • Biological Unit Coordinates (5n6r.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 5N6R
  • Original NMR restraints for 5N6R from PDB
  • Retrieve 5N6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N6R from S2C, [Save to disk]
  • View 5N6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N6R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5n6r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n6r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N6R
  • Community annotation for 5N6R at PDBWiki (http://pdbwiki.org)

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