5N7E Signaling Protein date Feb 20, 2017
title Crystal Structure Of The Dbl-Homology Domain Of Bcr-Abl In C With Monobody Mb(Bcr-Dh_4).
authors S.Reckel, A.Reynaud, F.Pojer, O.Hantschel
compound source
Molecule: Mb(Bcr-Dh_4)
Chain: A
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Phbt

Molecule: Breakpoint Cluster Region Protein
Chain: B
Synonym: Renal Carcinoma Antigen Ny-Ren-26
Ec: 2.7.11.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcr, Bcr1, D22s11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Petm-11
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.122 55.568 45.031 90.00 105.46 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase., Reckel S, Gehin C, Tardivon D, Georgeon S, Kukenshoner T, Lohr F, Koide A, Buchner L, Panjkovich A, Reynaud A, Pinho S, Gerig B, Svergun D, Pojer F, Guntert P, Dotsch V, Koide S, Gavin AC, Hantschel O, Nat Commun. 2017 Dec 13;8(1):2101. doi: 10.1038/s41467-017-02313-6. PMID:29235475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (5n7e.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 5N7E
  • Structure Factors (985 Kb)
  • Retrieve 5N7E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N7E from S2C, [Save to disk]
  • View 5N7E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N7E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5n7e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n7e_B] [5n7e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N7E
  • Community annotation for 5N7E at PDBWiki (http://pdbwiki.org)

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