5N8A Protein Binding date Feb 23, 2017
title Structure Of Rpa70n In Complex With Primpol (Fragment 480-56
authors N.C.Brissett, A.J.Doherty
compound source
Molecule: Dna-Directed Primasepolymerase Protein
Chain: X
Fragment: Unp Residues 479-559
Synonym: Hprimpol1,Coiled-Coil Domain-Containing Protein 11
Ec: 2.7.7.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Primpol, Ccdc111
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Replication Protein A 70 Kda Dna-Binding Subunit
Chain: A
Synonym: Rp-A P70,Replication Factor A Protein 1,Rf-A Prote Single-Stranded Dna-Binding Protein;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rpa1, Repa1, Rpa70
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.154 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.050 53.490 53.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.28 Å
ligand
enzyme Transferase E.C.2.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis for PrimPol recruitment to replication forks by RPA., Guilliam TA, Brissett NC, Ehlinger A, Keen BA, Kolesar P, Taylor EM, Bailey LJ, Lindsay HD, Chazin WJ, Doherty AJ, Nat Commun. 2017 May 23;8:15222. doi: 10.1038/ncomms15222. PMID:28534480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5n8a.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 5N8A
  • Structure Factors (1074 Kb)
  • Retrieve 5N8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N8A from S2C, [Save to disk]
  • Re-refined 5n8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5N8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N8A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5n8a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n8a_A] [5n8a_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N8A
  • Community annotation for 5N8A at PDBWiki (http://pdbwiki.org)

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