5N9Z Photosynthesis date Feb 27, 2017
title Rubisco From Thalassiosira Hyalina
authors I.Andersson, K.Valegard
compound source
Molecule: Ribulose Bisphosphate Carboxylase Large Chain
Chain: A, H, F, D, B, C, E, G
Ec: 4.1.1.39
Organism_scientific: Thalassiosira Hyalina
Organism_taxid: 1234817

Molecule: Ribulose-1,5-Bisphosphate Carboxylaseoxygenase S Subunit;
Chain: I, O, N, M, P, J, K, L

Organism_scientific: Thalassiosira Hyalina
Organism_taxid: 1234817
symmetry Space Group: P 1 21 1
R_factor 0.151 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.992 219.986 124.274 90.00 118.34 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 8RE, CAP, CSO, EDO, HLU, HYP, KCX, LYO, M3L, MG enzyme Lyase E.C.4.1.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


N, K, M, L, J, O, P, I


Primary referenceStructural and functional analyses of Rubisco from arctic diatom species reveal unusual posttranslational modifications., Valegard K, Andralojc PJ, Haslam RP, Pearce FG, Eriksen GK, Madgwick PJ, Kristoffersen AK, van Lun M, Klein U, Eilertsen HC, Parry MAJ, Andersson I, J Biol Chem. 2018 Jun 20. pii: RA118.003518. doi: 10.1074/jbc.RA118.003518. PMID:29925588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (866 Kb) [Save to disk]
  • Biological Unit Coordinates (5n9z.pdb1.gz) 850 Kb
  • LPC: Ligand-Protein Contacts for 5N9Z
  • CSU: Contacts of Structural Units for 5N9Z
  • Structure Factors (7383 Kb)
  • Retrieve 5N9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N9Z from S2C, [Save to disk]
  • View 5N9Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N9Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n9z_C] [5n9z_K] [5n9z_O] [5n9z_J] [5n9z_D] [5n9z_G] [5n9z_M] [5n9z_F] [5n9z_A] [5n9z_B] [5n9z_E] [5n9z_N] [5n9z_L] [5n9z_H] [5n9z_P] [5n9z_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N9Z
  • Community annotation for 5N9Z at PDBWiki (http://pdbwiki.org)

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