5NAP Hydrolase date Feb 28, 2017
title Torpedo Californica Acetylcholinesterase In Complex With A N Donepezil-Like Inhibitor 17
authors R.Caliandro, A.Pesaresi, D.Lamba
compound source
Molecule: Acetylcholinesterase
Chain: A
Synonym: Ache
Ec: 3.1.1.7
Organism_scientific: Tetronarce Californica
Organism_common: Pacific Electric Ray
Organism_taxid: 7787
symmetry Space Group: P 31 2 1
R_factor 0.170 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.530 111.530 136.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.17 Å
ligand
enzyme Hydrolase E.C.3.1.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • acetylcholine catabolic proc...

  • Primary referenceKinetic and structural studies on the interactions of Torpedo californica acetylcholinesterase with two donepezil-like rigid analogues., Caliandro R, Pesaresi A, Cariati L, Procopio A, Oliverio M, Lamba D, J Enzyme Inhib Med Chem. 2018 Dec;33(1):794-803. doi:, 10.1080/14756366.2018.1458030. PMID:29651884
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (5nap.pdb1.gz) 189 Kb
  • CSU: Contacts of Structural Units for 5NAP
  • Structure Factors (1504 Kb)
  • Retrieve 5NAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NAP from S2C, [Save to disk]
  • View 5NAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NAP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nap from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nap_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NAP
  • Community annotation for 5NAP at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science