5NAY Structural Protein date Feb 28, 2017
title Crystal Structures Of Homooligomers Of Collagen Type Iv. Alp
authors P.Casino, A.Marina
compound source
Molecule: Collagen Alpha-1(Iv) Chain
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Col4a1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.851 127.045 130.543 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (5nay.pdb1.gz) 225 Kb
  • LPC: Ligand-Protein Contacts for 5NAY
  • CSU: Contacts of Structural Units for 5NAY
  • Structure Factors (6382 Kb)
  • Retrieve 5NAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NAY from S2C, [Save to disk]
    • View 5NAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NAY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nay_D] [5nay_E] [5nay_F] [5nay_B] [5nay_C] [5nay_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NAY
  • Community annotation for 5NAY at PDBWiki (http://pdbwiki.org)

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