5NFC Sugar Binding Protein date Mar 13, 2017
title Structure Of Galectin-3 Crd In Complex With Glycerol
authors C.Ronin, C.Atmanene, F.M.Gautier, F.Djedaini Pilard, S.Teletchea F.Ciesielski, V.Vivat Hannah, C.Grandjean
compound source
Molecule: Galectin-3
Chain: A
Fragment: Unp Residues 106-250
Synonym: Gal-3,35 Kda Lectin,Carbohydrate-Binding Protein 3 Galactose-Specific Lectin 3,Galactoside-Binding Protein,Gal Binding Protein,L-31,Laminin-Binding Protein,Lectin L-29,Ma Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals3, Mac2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.146 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.750 58.290 62.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.59 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiophysical and structural characterization of mono/di-arylated lactosamine derivatives interaction with human galectin-3., Atmanene C, Ronin C, Teletchea S, Gautier FM, Djedaini-Pilard F, Ciesielski F, Vivat V, Grandjean C, Biochem Biophys Res Commun. 2017 Jul 29;489(3):281-286. doi:, 10.1016/j.bbrc.2017.05.150. Epub 2017 May 26. PMID:28554839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (5nfc.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 5NFC
  • CSU: Contacts of Structural Units for 5NFC
  • Structure Factors (138 Kb)
  • Retrieve 5NFC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NFC from S2C, [Save to disk]
  • Re-refined 5nfc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NFC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NFC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nfc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NFC
  • Community annotation for 5NFC at PDBWiki (http://pdbwiki.org)

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