5NG7 Hydrolase date Mar 17, 2017
title Novel Epoxide Hydrolases Belonging To The Alphabeta Hydrola Superfamily In Metagenomes From Hot Environments
authors E.E.Ferrandi, S.A.De Rose, C.Sayer, E.Guazzelli, C.Marchesi, V.Sa M.N.Isupov, J.A.Littlechild, D.Monti
compound source
Molecule: Epoxide Hydrolase
Chain: A, B
Ec: 3.3.2.10
Engineered: Yes
Organism_scientific: Metagenome
Organism_taxid: 256318
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.173 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.940 46.220 73.870 90.00 106.94 90.00
method X-Ray Diffractionresolution 1.39 Å
ligand CL, EDO, PEG, SER enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNew Thermophilic alpha/beta Class Epoxide Hydrolases Found in Metagenomes From Hot Environments., Ferrandi EE, Sayer C, De Rose SA, Guazzelli E, Marchesi C, Saneei V, Isupov MN, Littlechild JA, Monti D, Front Bioeng Biotechnol. 2018 Oct 16;6:144. doi: 10.3389/fbioe.2018.00144., eCollection 2018. PMID:30386778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5ng7.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 5NG7
  • CSU: Contacts of Structural Units for 5NG7
  • Structure Factors (1598 Kb)
  • Retrieve 5NG7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NG7 from S2C, [Save to disk]
  • View 5NG7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NG7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ng7_A] [5ng7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NG7
  • Community annotation for 5NG7 at PDBWiki (http://pdbwiki.org)

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