5NGV	Transferase	date	Mar 20, 2017
title	Crystal Structure Of The Activin Receptor Type-2b Ligand Bin Domain In Complex With Bimagrumab Fv, Orthorhombic Crystal
authors	J.M.Rondeau, S.Lehmann
compound		source
Molecule: Activin Receptor Type-2b Chain: A Fragment: Ligand Binding Domain Synonym: Activin Receptor Type Iib,Actr-Iib Ec: 2.7.11.30 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Acvr2b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Shuffle Expression_system_vector_type: Plasmid
Molecule: Anti-Human Actriib Mab Bym338 Heavy-Chain Chain: H Fragment: Vh Engineered: Yes Other_details: C-Terminal His6-Tag		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: W3110 Expression_system_vector_type: Plasmid
Molecule: Anti-Human Actriib Mab Bym338 Light-Chain Chain: L Fragment: Vl Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: W3110 Expression_system_vector_type: Plasmid
symmetry	Space Group: I 2 2 2	R_factor 0.177 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.100 114.170 117.940 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	PCA, PG4	enzyme	Transferase E.C.2.7.11.30 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Blockade of activin type II receptors with a dual anti-ActRIIA/IIB antibody is critical to promote maximal skeletal muscle hypertrophy., Morvan F, Rondeau JM, Zou C, Minetti G, Scheufler C, Scharenberg M, Jacobi C, Brebbia P, Ritter V, Toussaint G, Koelbing C, Leber X, Schilb A, Witte F, Lehmann S, Koch E, Geisse S, Glass DJ, Lach-Trifilieff E, Proc Natl Acad Sci U S A. 2017 Nov 6. pii: 201707925. doi:, 10.1073/pnas.1707925114. PMID:29109273

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (5ngv.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 5NGV CSU: Contacts of Structural Units for 5NGV Structure Factors (267 Kb) Retrieve 5NGV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NGV from S2C, [Save to disk]

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Visual 3D analysis of 5NGV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ngv_H] [5ngv_A] [5ngv_L] SWISS-PROT database: Domain organization of by SWISSPFAM

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