5NGZ Ligase date Mar 21, 2017
title Ube2t In Complex With Fragment Em04
authors F.E.Morreale, A.Bortoluzzi, V.K.Chaugule, C.Arkinson, H.Walden, A
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 T
Chain: A
Synonym: Cell Proliferation-Inducing Gene 50 Protein,E2 Ubi Conjugating Enzyme T,Ubiquitin Carrier Protein T,Ubiquitin- Ligase T;
Ec: 2.3.2.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2t, Hspc150, Pig50
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.210 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.817 55.817 185.278 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 2BG enzyme Transferase E.C.2.3.2.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAllosteric Targeting of the Fanconi Anemia Ubiquitin-Conjugating Enzyme Ube2T by Fragment Screening., Morreale FE, Bortoluzzi A, Chaugule VK, Arkinson C, Walden H, Ciulli A, J Med Chem. 2017 May 2. doi: 10.1021/acs.jmedchem.7b00147. PMID:28437106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5ngz.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 5NGZ
  • CSU: Contacts of Structural Units for 5NGZ
  • Structure Factors (458 Kb)
  • Retrieve 5NGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NGZ from S2C, [Save to disk]
  • Re-refined 5ngz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NGZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ngz_A] [5ngz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NGZ
  • Community annotation for 5NGZ at PDBWiki (http://pdbwiki.org)

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