5NIF		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component A, O proteasome core complex, alp... B, P proteasome core complex, alp... D, R E, S proteasome core complex, alp... G, U proteasome core complex, alp... I, W proteasome core complex, bet... J, X endopeptidase activator acti... proteasome core complex, bet... L, Z proteasome core complex, bet... M, 1 N, 2 proteasome core complex, bet... Q, C proteasome core complex, alp... T, F proteasome core complex, alp... V, H proteasome core complex, bet... Y, K endopeptidase activator acti... proteasome core complex, bet...
Primary reference	Crystal structure of a low molecular weight activator Blm-pep with yeast 20S proteasome - insights into the enzyme activation mechanism., Witkowska J, Gizynska M, Grudnik P, Golik P, Karpowicz P, Gieldon A, Dubin G, Jankowska E, Sci Rep. 2017 Jul 21;7(1):6177. doi: 10.1038/s41598-017-05997-4. PMID:28733623

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (980 Kb) [Save to disk] Biological Unit Coordinates (5nif.pdb1.gz) 968 Kb CSU: Contacts of Structural Units for 5NIF Structure Factors (6049 Kb) Retrieve 5NIF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NIF from S2C, [Save to disk] Re-refined 5nif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5NIF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nif_Q] [5nif_1] [5nif_2] [5nif_3] [5nif_4] [5nif_A] [5nif_B] [5nif_C] [5nif_D] [5nif_E] [5nif_F] [5nif_G] [5nif_H] [5nif_I] [5nif_J] [5nif_K] [5nif_L] [5nif_M] [5nif_N] [5nif_P] [5nif_O] [5nif_R] [5nif_S] [5nif_T] [5nif_U] [5nif_V] [5nif_W] [5nif_X] [5nif_Y] [5nif_Z] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---