5NJ8 Transcription date Mar 28, 2017
title Structural Basis For Aryl Hydrocarbon Receptor Mediated Gene Activation
authors O.Daumke, K.W.Schulte
compound source
Molecule: Aryl Hydrocarbon Receptor
Chain: A, C
Synonym: Ahr,Class E Basic Helix-Loop-Helix Protein 76,Bhlh
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ahr, Bhlhe76
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosette

Molecule: Aryl Hydrocarbon Receptor Nuclear Translocator
Chain: B, D
Synonym: Arnt Protein,Dioxin Receptor,Nuclear Translocator, Inducible Factor 1-Beta,Hif1-Beta;
Engineered: Yes
Mutation: Yes
Other_details: Internal Deletion Of 274-301

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Arnt
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpgptpcpapcpgpcpapapcpc)-3'
Chain: E, G
Engineered: Yes
Other_details: Dioxin Response Element

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Gpgptptpgpcpgptpgpapcpc)-3'
Chain: F, H
Engineered: Yes
Other_details: Dioxin Response Element

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 65 2 2
R_factor 0.292 R_Free 0.333
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.321 91.321 464.914 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk]
  • Biological Unit Coordinates (5nj8.pdb1.gz) 202 Kb
  • Biological Unit Coordinates (5nj8.pdb2.gz) 154 Kb
  • CSU: Contacts of Structural Units for 5NJ8
  • Structure Factors (262 Kb)
  • Retrieve 5NJ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NJ8 from S2C, [Save to disk]
  • Re-refined 5nj8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NJ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NJ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nj8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nj8_G] [5nj8_A] [5nj8_E] [5nj8_B] [5nj8_F] [5nj8_D] [5nj8_H] [5nj8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NJ8
  • Community annotation for 5NJ8 at PDBWiki (http://pdbwiki.org)

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