5NKS Hydrolase date Mar 31, 2017
title Human Dihydropyrimidinase-Related Protein 4 (Dpysl4, Crmp3,
authors S.Mathea, J.M.Elkins, C.Strain-Damerell, E.Salah, O.Borkowska, R. N.Burgess-Brown, D.M.Pinkas, F.Von Delft, T.Krojer, C.H.Arrowsm A.M.Edwards, C.Bountra, S.Knapp
compound source
Molecule: Dihydropyrimidinase-Related Protein 4
Chain: A
Synonym: Drp-4,Collapsin Response Mediator Protein 3,Crmp-3 Like Phosphoprotein 4,Ulip-4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpysl4, Crmp3, Ulip4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: I 2 2 2
R_factor 0.155 R_Free 0.200
length a length b length c angle alpha angle beta angle gamma
80.470 102.650 116.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5nks.pdb1.gz) 323 Kb
  • CSU: Contacts of Structural Units for 5NKS
  • Structure Factors (1947 Kb)
  • Retrieve 5NKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NKS from S2C, [Save to disk]
  • View 5NKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NKS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nks from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nks_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NKS
  • Community annotation for 5NKS at PDBWiki (http://pdbwiki.org)

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