5NL0 Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1 date
authors Garcia-Saez, I., Petosa, C., Dimitrov, S.
compound source
R_Free 0.2653
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.40
A, K, E

F, B, L

M, C, G

N, H, D


Primary referenceStructure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1., Bednar J, Garcia-Saez I, Boopathi R, Cutter AR, Papai G, Reymer A, Syed SH, Lone IN, Tonchev O, Crucifix C, Menoni H, Papin C, Skoufias DA, Kurumizaka H, Lavery R, Hamiche A, Hayes JJ, Schultz P, Angelov D, Petosa C, Dimitrov S, Mol Cell. 2017 May 4;66(3):384-397.e8. doi: 10.1016/j.molcel.2017.04.012. PMID:28475873
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (955 Kb) [Save to disk]
  • Biological Unit Coordinates (5nl0.pdb1.gz) 637 Kb
  • Biological Unit Coordinates (5nl0.pdb2.gz) 311 Kb
  • CSU: Contacts of Structural Units for 5NL0
  • Structure Factors (603 Kb)
  • Retrieve 5NL0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NL0 from S2C, [Save to disk]
  • Re-refined 5nl0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NL0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NL0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nl0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nl0_B] [5nl0_S] [5nl0_M] [5nl0_H] [5nl0_J] [5nl0_I] [5nl0_L] [5nl0_N] [5nl0_E] [5nl0_F] [5nl0_D] [5nl0] [5nl0_C] [5nl0_G] [5nl0_Z] [5nl0_K] [5nl0_T] [5nl0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NL0
  • Community annotation for 5NL0 at PDBWiki (http://pdbwiki.org)

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