5NM2 Signaling Protein date Apr 05, 2017
title A2a Adenosine Receptor Cryo Structure
authors T.Weinert, R.Cheng, D.James, D.Gashi, P.Nogly, K.Jaeger, A.S.Dore, R.Cooke, M.Hennig, J.Standfuss
compound source
Molecule: Adenosine Receptor A2a,Soluble Cytochrome B562,Ad Receptor A2a;
Chain: A
Synonym: Cytochrome B-562
Engineered: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Adora2a, Adora2, Cybc
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: C 2 2 21
R_factor 0.175 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.428 179.599 139.847 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CLR, NA, OLA, OLB, OLC, ZMA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSerial millisecond crystallography for routine room-temperature structure determination at synchrotrons., Weinert T, Olieric N, Cheng R, Brunle S, James D, Ozerov D, Gashi D, Vera L, Marsh M, Jaeger K, Dworkowski F, Panepucci E, Basu S, Skopintsev P, Dore AS, Geng T, Cooke RM, Liang M, Prota AE, Panneels V, Nogly P, Ermler U, Schertler G, Hennig M, Steinmetz MO, Wang M, Standfuss J, Nat Commun. 2017 Sep 14;8(1):542. doi: 10.1038/s41467-017-00630-4. PMID:28912485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (5nm2.pdb1.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 5NM2
  • CSU: Contacts of Structural Units for 5NM2
  • Structure Factors (820 Kb)
  • Retrieve 5NM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NM2 from S2C, [Save to disk]
  • View 5NM2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NM2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nm2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NM2
  • Community annotation for 5NM2 at PDBWiki (http://pdbwiki.org)

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