5NMZ Signaling Protein date Apr 07, 2017
title Human Neurturin (97-197)
authors J.M.Bigalke, J.Sandmark, R.Roth
compound source
Molecule: Neurturin
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrtn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.231 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.433 50.794 53.642 76.42 89.33 94.74
method X-Ray Diffractionresolution 1.60 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and biophysical characterisation of the human full-length Neurturin-GFRa2 complex - a role for heparan sulfate in signalling., Sandmark J, Dahl G, Oster L, Xu B, Johansson P, Akerud T, Aagaard A, Davidsson P, Bigalke JM, Sorhede-Winzell M, Rainey GJ, Roth RG, J Biol Chem. 2018 Feb 2. pii: RA117.000820. doi: 10.1074/jbc.RA117.000820. PMID:29414779
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5nmz.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (5nmz.pdb2.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 5NMZ
  • CSU: Contacts of Structural Units for 5NMZ
  • Structure Factors (1221 Kb)
  • Retrieve 5NMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NMZ from S2C, [Save to disk]
    • View 5NMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NMZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nmz_D] [5nmz_B] [5nmz_C] [5nmz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NMZ
  • Community annotation for 5NMZ at PDBWiki (http://pdbwiki.org)

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